rs27738675 SNP Detail

Summary

• ID
  rs27738675
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14516819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTATCA AAAATACCGT
  GTGTGTTGTT TCTTTTCTTG GCTATTGGTA AGGACAGTGC ATATTTTTCA GTGTTTATTC
  CATACCCAAG TCTTGAAGAC ATTAACAACT GAATCTTTGC AAAGCATTCT GTGGGGTTAC
  TAATCTTGTG TCCCATTATG AGGGAGGCAA AGATTAGAAA GCTAGAAAAC CAGGTCAAAG
  M
  TAGGGACATC TCAGTCTGGA ATCAGCCAAT GCCTTTCCAT GTTTCCACTG CTTGTACAGC
  TTCTTAGAGT GCTCTTCTTA AAGGTGGGGT AGAGACCATT ACCCCTACAT GTTGCCCTGT
  GCTGCAGATA ACATATTTTT ATCAGATTAC TTAGCACTTT TCAGAGATTC AATACTTCTT
  TTATTCAGTA TTCAAATAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37892197	NES08655526	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27738675					SNP	A	A	A	A	A	A	C	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37892197	NES08655526	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14516819 () rs orientation: forward

Symbol	Name	Function Class
Slc26a7	solute carrier family 26, member 7	within coordinates
Tssr40956	transcription start site region 40956	441 bp upstream