rs27738679 SNP Detail

Summary

• ID
  rs27738679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14516601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCATCCA ACAGAATTTT
  TGCTCACTTA GTCAGATGTT AGAACATTTT CTGAAAGACT AAATTTGTTT TGATCTGACA
  TCAAAAACTA TTTCATACAC ATTAGTCCCA CAAAAACGCT TGAGAAACAT TTATCACGTG
  CTAGACATCA GGAAGTGAAA ACAAAGCGGC TCTGTATCAT AGCTCAGTGT CTCTACCAGC
  R
  GGGCCTCGGC AATGCAGTTG CCTATCAAAA ATACCGTGTG TGTTGTTTCT TTTCTTGGCT
  ATTGGTAAGG ACAGTGCATA TTTTTCAGTG TTTATTCCAT ACCCAAGTCT TGAAGACATT
  AACAACTGAA TCTTTGCAAA GCATTCTGTG GGGTTACTAA TCTTGTGTCC CATTATGAGG
  GAGGCAAAGA TTAGAAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37892201	NES08655521	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27738679					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37892201	NES08655521	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14516601 () rs orientation: forward

Symbol	Name	Function Class
Slc26a7	solute carrier family 26, member 7	within coordinates
Tssr40956	transcription start site region 40956	223 bp upstream