rs27738685 SNP Detail

Summary

• ID
  rs27738685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14516301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAAGG GGAGAAGGAG
  GTGTGTATCC TACGGTGTAA AAGCAAACTC ACCATTGCAG TTGCCGTTGG ACAGGGAACT
  GAGCAAGGTG TTCTGTTCAC ACTGAAATAA AATAAACGTA AAGAATAAAA GCGCTGTGGA
  ACAATGAATA GCCGCCAATG AGAAAGTTGC ACATTCCTTT CTCCATGTTG AGTAACAACA
  R
  TCAGCACCGC CAAAGGTTTT GTTCCAGGAG GGTTTCAGAT GCTGTGTGCC CGCAGTGAAC
  TAGGAAGTGA AGAACGATTA TGGGCTGGAA ATAAGCATAC ATTCATCCAA CAGAATTTTT
  GCTCACTTAG TCAGATGTTA GAACATTTTC TGAAAGACTA AATTTGTTTT GATCTGACAT
  CAAAAACTAT TTCATACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37892207	NES08655515	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		A	G	G	G	G	A	A	A	G
ss45674106	mCV22942727	ABI	CRAMUS_MOUSE	f	SNP	G	A					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27738685					SNP	G	A	G	G	G	G	G	A	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37892207	NES08655515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14516301 () rs orientation: forward

Symbol	Name	Function Class
Slc26a7	solute carrier family 26, member 7	within coordinates
Tssr40956	transcription start site region 40956	66 bp downstream