rs27738687 SNP Detail

Summary

• ID
  rs27738687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14516254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCTAGCT GAAGAACAGG
  AAAACCCTCA AGGAAGAGGG CCAATGGAGA GAAAAGGGGA GAAGGAGGTG TGTATCCTAC
  GGTGTAAAAG CAAACTCACC ATTGCAGTTG CCGTTGGACA GGGAACTGAG CAAGGTGTTC
  TGTTCACACT GAAATAAAAT AAACGTAAAG AATAAAAGCG CTGTGGAACA ATGAATAGCC
  R
  CCAATGAGAA AGTTGCACAT TCCTTTCTCC ATGTTGAGTA ACAACAGTCA GCACCGCCAA
  AGGTTTTGTT CCAGGAGGGT TTCAGATGCT GTGTGCCCGC AGTGAACTAG GAAGTGAAGA
  ACGATTATGG GCTGGAAATA AGCATACATT CATCCAACAG AATTTTTGCT CACTTAGTCA
  GATGTTAGAA CATTTTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37892209	NES08655513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27738687					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37892209	NES08655513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14516254 () rs orientation: forward

Symbol	Name	Function Class
Slc26a7	solute carrier family 26, member 7	within coordinates
Tssr40956	transcription start site region 40956	113 bp downstream