rs27738690 SNP Detail

Summary

• ID
  rs27738690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14516125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTAACAA GAAAAGGTAA
  AAGGAACAAG TGGATGAGTA AAAAGGAAGA GAGGAGGAGG GAGAGAGGCA GAGATAAAAA
  TAAGAGGGTG AGTAAACAGG GATGGGAAGA GGTAGGAGGT GGAGAGGGGG ATTCTAGCTG
  AAGAACAGGA AAACCCTCAA GGAAGAGGGC CAATGGAGAG AAAAGGGGAG AAGGAGGTGT
  R
  TATCCTACGG TGTAAAAGCA AACTCACCAT TGCAGTTGCC GTTGGACAGG GAACTGAGCA
  AGGTGTTCTG TTCACACTGA AATAAAATAA ACGTAAAGAA TAAAAGCGCT GTGGAACAAT
  GAATAGCCGC CAATGAGAAA GTTGCACATT CCTTTCTCCA TGTTGAGTAA CAACAGTCAG
  CACCGCCAAA GGTTTTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37892212	NES08655510	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G	G	A	A	A	G
ss45676828	mCV22942736	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss146043045	ENSMUSSNP4937932	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27738690					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37892212	NES08655510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14516125 () rs orientation: forward

Symbol	Name	Function Class
Slc26a7	solute carrier family 26, member 7	within coordinates
Tssr40956	transcription start site region 40956	242 bp downstream