rs27746429 SNP Detail

Summary

• ID
  rs27746429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10946761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATCTT TTTTTCCAGC
  CTCTCCTTTT CTCCGGCGGC TGGGAAGATG GCGGACATTC AGACGGAGCG TGCTTACCAA
  AAGCAGCCTA CGAGCTTTCA AAACAAGAAG CGGGTTCTGC TGGGAGAACC CGACAAGGAA
  AAACTCCCTC GGTACTACAA GAACATTGGT CTAGGCTTCA AGACGCCCAA AGAGGCCACC
  R
  AGGGCACCTA CCTAGACAAG AAATGCCCCT TCACTGGTAA TGTCTCCATC CGAGGTCCGA
  TCCTGTCTGG TGTCGTGATG AAGATGAAGA TGCAGAGGAC CATCGTCATC CGCCGGGACT
  ATCTCCATTA CATCTGAAAG TACAATCGCT TTGAGAAGTG TCACAAGAAC ATGTCTGTGC
  ACCTGTTTCA GGGATCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37905173	NES08657417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27746429					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37905173	NES08657417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10946761 () rs orientation: forward

Symbol	Name	Function Class
Rps11-ps3	ribosomal protein S11, pseudogene 3	within coordinates
Tssr36461	transcription start site region 36461	163 bp downstream