rs27766097 SNP Detail

Summary

• ID
  rs27766097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:23624398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAACCT GACTGTGAAA
  TCACTTGCTG CAGTGCACAA TAGTAGGCGT GCTGCCACAG AAGTTTCTTT CTCATTTCCA
  TCTCTGCTCA ATGGAAGTGA GAATTGAACT AGATCAACAC TGAGAAGCTT AGATTTTAGA
  AGGGTTTTAT ACAAAATGGG ACTATGTTTG CAAAGTGCCT TCGAAGTTCA AAGCCATAAT
  K
  AATGTAAGTC TTTGTGCCTT GTTAAATACA TATGTATCTG CTTGCTCAAC ACTCTCAGAT
  AATCAGTTTG AAGAGACCTG ACATCTTATG TGAGGGTTCA GTTGTACACG TCCACTTAAA
  TTATTTTCTA AAAAAATAAT AATTGTAAGT CTATTAACTT GAATTTTTCT TTTTGAAAAT
  AGATAAAATA CTCTGAGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37906356	NES08620322	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27766097					SNP	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37906356	NES08620322	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:23624398 () rs orientation: forward

Symbol	Name	Function Class
Rr376229	regulatory region 376229	485 bp upstream