rs27766101 SNP Detail

Summary

• ID
  rs27766101
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:23623631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCCTGA TAGAGTTTGT
  GTGTGGTCCA TTTCCGAATG CTCCATATAA AGCAATGTCA TGGAAAGTAT TTCTGGTTAA
  ATCACATCGG CCCCATACAG ACATTAATGG CAGAGTGAAG AATAGATCTG GTCACCTTTG
  AGGAAGTAAT ACAACAAAGA AATTGGGAAT TTGGGTCCAG TGCTTCTTCT CTTCCTTATG
  S
  TCATAGGACT CACATGGTGG CATCAGTTTT ACTATTTACA CTGCACTATC ATGTTGCCGC
  AGTACTTTTA TAATGAGAAA TGATGATATG TGAAATTACT ATGTAACTAA AGACATACTA
  TTTTTGGGTT AATCTGAAAA AAGGAAGAAC TATGTAAATT ATTGTTCTCA TAAATAATTA
  ATATTAGAAT GTTGAACAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37906360	NES08620318	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27766101					SNP	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37906360	NES08620318	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:23623631 () rs orientation: forward

Symbol	Name	Function Class
Rr376229	regulatory region 376229	1252 bp upstream