rs27766104 SNP Detail

Summary

• ID
  rs27766104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:23623488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATTTCC ATGGTGCTTT
  CTAGGTAAGG GCTCCTTATA TACCTCTTGC TGTATTCTAC ATTTTATCAG GTCCCCTAAA
  CTCTATTTTA CTCTAACTTA TCATAAGTAT GCAAAGACTT CCTGAAAGTG CCTGTGGGAC
  AGAAAACTCC TGATAGAGTT TGTGTGTGGT CCATTTCCGA ATGCTCCATA TAAAGCAATG
  Y
  CATGGAAAGT ATTTCTGGTT AAATCACATC GGCCCCATAC AGACATTAAT GGCAGAGTGA
  AGAATAGATC TGGTCACCTT TGAGGAAGTA ATACAACAAA GAAATTGGGA ATTTGGGTCC
  AGTGCTTCTT CTCTTCCTTA TGGTCATAGG ACTCACATGG TGGCATCAGT TTTACTATTT
  ACACTGCACT ATCATGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37906363	NES08620315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27766104					SNP	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37906363	NES08620315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:23623488 () rs orientation: forward

Symbol	Name	Function Class
Rr376229	regulatory region 376229	1395 bp upstream