rs27773300 SNP Detail

Summary

• ID
  rs27773300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26354201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGGTCC CTCTTGAAGC
  GAAATTAGCA TCAGAATACC AACAGCACCA GGGCAATCCA AAACACTCCC CTGACAGGGG
  TGTGAGTCAC TGGAAGCTAC AAGTAAGCTT CCTAGATGCT GGGGCTCCCC AATCAGAAGA
  GTCTAGTCCT CTCAAGCCAG CTTTCTGTCC ATGTGTCCCT CTGTTTGTCG TTTACTAATT
  S
  CCTCATATCC TTCTTATTCA GGCTGAGTCC CTAGGAGAGA TGTAAGTATT TGGCAAATGG
  TGCCCAAACA ACAGAGACCT TGGACACCGC TATGGGGTGT TCTCATTGGT CAGAGGAAGG
  AGTGTTCTTG AGAGTAGCAT GATTACACAG GAAAAAGAAC CAATGCAGGA AAAGGAAGAA
  ATACAGGGAA AGGAAGAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37923329	NES08601696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27773300					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923329	NES08601696	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26354201 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	within coordinates
Rr589721	regulatory region 589721	within coordinates
Rr589722	regulatory region 589722	338 bp proximal