rs27773302 SNP Detail

Summary

• ID
  rs27773302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26353313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATAATT CTTTCTATTA
  AAATAGAAAA AGAATGTAGA TTTATTTGCT GGAACTTCTT TGTTAAAGAA TGTTGTCAAA
  ATTCACTTAT GCCTGTATTG TGTGCATTTA AAAAGAATTA TGATGCTAAG GTCCATGAAT
  ACATGTATAG AAACTGATTC ATGGCTGGGT CTCCAAACGC CAGCCCCTAG TAAGTGTTTA
  Y
  AGTAAGGTGA ACAATGATTC CCAAATATAC ACAGCTCATA ATCACCTGAA CCTATACATG
  TTTAGTTTTC AAAGGAGCAC TGTCCACACG ATTGTTAACT TTCAGATGCT CAGCATAAAC
  TCTTAACAGA GAGACCTCTT TTATGTGCCT GCAGAAACCA GAGAAAAGCA CTGGATACAC
  TGGAAATGGA GTTACAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37923331	NES08601813	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27773302					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923331	NES08601813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26353313 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	51 bp upstream
Rr589721	regulatory region 589721	791 bp proximal
Rr589722	regulatory region 589722	1226 bp proximal