rs27773303 SNP Detail

Summary

• ID
  rs27773303
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26352883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTAGA AAGCTGAGCC
  AGCAGGGAGA TTACATGCTC TGAGGGGGAA GTTAATGCAA AAATCCATGC AGAGCATCTC
  TGAAGGAATG AAGCTTCAAG TACTATGATC CTGCAAAAGT GTCCGGCCAC ATTCAACCAA
  GTTGCAAATG TTGTACCACT TAAAATGCAG ACGTTGTCCT TTTAAGGTGA TATGACTGGA
  K
  TTTCTTCCTT TCCAAGGGAT CATGCATTAG AGTCAAATGA CCTTACAGTA TCTTCTATTA
  TGAAAGAAAA TGTACCTTCT ATTATGAAAG AAAATAAGTT CATAAAGACA GAAAATTAAC
  ATAAGCTTTA TTATATCTCA AAATAGATGA GCTCTTGTGC TCTCTTTCTA TATCAGGGAC
  TCACAGCTCC TTCAAGATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37923332	NES08601810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27773303					SNP	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923332	NES08601810	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26352883 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	481 bp upstream
Rr589721	regulatory region 589721	1221 bp proximal
Rr589722	regulatory region 589722	1656 bp proximal