rs27773306 SNP Detail

Summary

• ID
  rs27773306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26352307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTGCAC TTTATGTACT
  ATTTGGCTGC ATACATGTTT AGAGTGTTAT ATGATAGATT GGCACATATA ACTCTAAGAA
  GTCCCTGAGT AAAGTTCTAC ACTTTCTATT GAATGACAAT GCAGCTCTTT CAACTATTCT
  AGTCTTTTGT TAAATGTACT ATGAAATCTG GTGGATGACC ACTATTCTGG CCACCAGGAA
  Y
  CCATTTTAAC TCAAATAAAT CTACTCACAA TTGCTAATGG GATCAAAGAT GTTGGCTTTT
  AAACATAGAT TCCTGAATCT ATAAGTCAGA TAAACTCTCA GATTTTATAG TGCTCACCAT
  AAAATAACTT TTGACCAAAG TGTAAGGCTT TTCTAAGTAT AGACATTCTG TGACTCCTGC
  ATTTTATCAG GTCAGGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37923335	NES08601802	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27773306					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923335	NES08601802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26352307 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	1057 bp upstream
Rr589721	regulatory region 589721	1797 bp proximal