rs27773307 SNP Detail

Summary

• ID
  rs27773307
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26352124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTAGCA ACAAAACAAA
  ACAGAACAAA ACAGGAAATC CCCAAGGAAA AGCCTTTTTA AAAAAATCAC AGTGAGCTTC
  TTAATGTCAT GCCTAGTTTT GTTTTGTCCA TGTGTGTCCT GCTACAAATT TTTGAGTCCT
  TCAATCCCAG TTTCATTTAC AATTTTGGCA TCAATTATAT TTTTGTTCTG CACTTTATGT
  M
  CTATTTGGCT GCATACATGT TTAGAGTGTT ATATGATAGA TTGGCACATA TAACTCTAAG
  AAGTCCCTGA GTAAAGTTCT ACACTTTCTA TTGAATGACA ATGCAGCTCT TTCAACTATT
  CTAGTCTTTT GTTAAATGTA CTATGAAATC TGGTGGATGA CCACTATTCT GGCCACCAGG
  AATCCATTTT AACTCAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37923336	NES08601801	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27773307					SNP	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923336	NES08601801	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26352124 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	1240 bp upstream
Rr589721	regulatory region 589721	1980 bp proximal