rs27773309 SNP Detail

Summary

• ID
  rs27773309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:26351625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGCATT TGATTATCAG
  CAATGAATGG TCTTCTTATT TCCTATACCT AGCAAAATGC TTGCATTTTC AGCCAGCATT
  TTCTCATCTC TATTTTAATG GGTCTTCCTC TGTTTCCTGA ATATCACATG CCTCTCCTCC
  ACTGCTTTTT CCCAAACCTG GCCACAAAGT GTCATTTAGT AACTTTAAAT GTCATTGTTC
  Y
  TCTCATCTGG AAAGCAAACT CACAGATCAA GGGAAGCCTG TTTCCTGAAG TACAGTGTGC
  TGGTGAAGGC TAGTGTTCTA GGCAGTGATA ACTGCTAGGA ACCAAAAGGG CTATACAGAA
  GAGTACAGTT TGGTTCTTCT CTTTTATGGC TCACCATTAG ACATTGCTCT TATTAACTCC
  ATCTGCATAT TCTGTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37923338	NES08601795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27773309					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37923338	NES08601795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:26351625 () rs orientation: forward

Symbol	Name	Function Class
Rr376252	regulatory region 376252	1739 bp upstream