rs27773879 SNP Detail

Summary

• ID
  rs27773879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55476425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC AATGTAGAAA AGGAACACAA
  Y
  CAAGGTCAGG ACCTAAGTTG TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37962398	NES09443438	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	T		T	C	C	T		C
ss146361531	ENSMUSSNP1193627	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321127989	CHEV_4_55489297	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27773879					SNP	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37962398	NES09443438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55476425 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Tssr37333	transcription start site region 37333	1159 bp upstream
Tssr37334	transcription start site region 37334	1301 bp upstream
Tssr37335	transcription start site region 37335	1447 bp upstream
Tssr37336	transcription start site region 37336	1498 bp upstream
Tssr37337	transcription start site region 37337	1761 bp upstream
Tssr41779	transcription start site region 41779	1024 bp upstream
Tssr41780	transcription start site region 41780	957 bp downstream