rs27773894 SNP Detail

Summary

• ID
  rs27773894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55474153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATTATT TGGGCCGTTG
  AAATCAGTTA ATAAGACCCG CCAATCCTGC AGTGTGTCTC CTCTTGTACT GAGGATGAAG
  ATGGTGAATG TAAAGAAAGG AACTCCGGGA TAGCATCGCA TTTGTGAGCC TCTTTAAACT
  ACCATGCCTT TTTCCACAAG AGTCCACGCC TCTGAGATTT CCTGGAATGG TCCCAATCTC
  W
  TCTGCTTTAC GTTCCCACAA ATACTCTCAG CCAGACACAA AGCTCTGACT TTAAGCAGGA
  AAAAGGCAGA CACCGTAGAC CTCACACAAA TGTCCGTTTC TAAGCAACTG TGTATCAAGG
  ATACATCAAG TTCACTAAAA AGATACCCTG GTAGCTCCTG TATCCCAAAC AGAGCTCCGT
  AATGCAGCAC CGCTGACTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37962413	NES09443573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27773894					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37962413	NES09443573	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55474153 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Gm68870	predicted gene, 68870	1213 bp downstream
Rr376520	regulatory region 376520	1 bp upstream
Tssr41779	transcription start site region 41779	1226 bp downstream