rs27773899 SNP Detail

Summary

• ID
  rs27773899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55473565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAAGAA TGCAGATCCA
  CACATACATA TAAACACGCA TACACCTGTG CATACACACA CACACACACA CACACACACA
  TACACACACA CACACACACA CACACACACA CACACACACA CACACAGACA GACAGACAGA
  CAGACAGACT TGAGTAATGA GACTTTGAAA AAGCTCCCAT GTAGAGTAAA TGAGAACAAT
  Y
  GGCTGTAAGA TAGTATACAA TGAGATATTG TGATTTGTGT TTAGAAAACA GAATGGTGTG
  TTTTTGCACA TACGTGCAGG CATATGGGTG GATAGAAAAG GCTGAGGCTG GCACTGTGGT
  CAACTCTCAC CAGCACCCTT GGCAAGATTG GGCCAGGAAA AGGGACAGCA CACAAGAAAG
  ACTGTTTGTT TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37962418	NES09443635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27773899					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37962418	NES09443635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55473565 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Gm68870	predicted gene, 68870	625 bp downstream
Rr376520	regulatory region 376520	589 bp upstream
Rr592486	regulatory region 592486	490 bp proximal
Tssr41779	transcription start site region 41779	1814 bp downstream