rs27780240 SNP Detail

Summary

• ID
  rs27780240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:52810859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGAGG GAAGGAAGGA
  AGGAAGTTAG GTCATCCTTG TTTATCAAAA GAACTTAGAA TACTTATTGG AAGGCCTGGT
  CATTTATTAT TTCTAACACC TCTACACTGT CTTTGTTTTC TTTAAAAGAT AAAATATGAG
  TGCTAAGGCA TTGATAAATT ATAAATATTG CTTCTTTCAT ACTCACATGT GTCTCCTATT
  R
  TCTAGCAATT AAATATTTTT TCAAATGTGT TCCAGATATA AACATGACAT CATTGTGTGA
  AAAATGGAGG AAAGAAGGAA GGAAAGGAGG GGGAAAAGGA AGAAGGAAAT ATTTATAATA
  TTTAATTTAA TGATTTAGTT ACATATTTTA TATATTAATA TAGATTACCC ATGCTAGCCA
  CTCACGAAAA TTTAGCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37973459	NES09415350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27780240					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37973459	NES09415350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:52810859 () rs orientation: forward

Symbol	Name	Function Class
Gm69938	predicted gene, 69938	1260 bp downstream