rs27781844 SNP Detail

Summary

• ID
  rs27781844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53879600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGGCA ACAGAGGCCA
  GCAAACATAG CAAGGACTCC GGAGGCCCCT GGTTTTTTTT AATATAACTA AAGCCATAGA
  CTCTCCGAGC TTCCACGAGT GAATGACCTT GGAGGTGGCC ACTGGAGACG GGTGGAAAGA
  ATGGCGAGTG GAGAATCAGG CCCGTCCTTT CTTCAAAGCA ATCTCACATC TCAGTCAGTG
  Y
  CTCGAAACCA TTCTCCAGAC AAGGCTTTAT GCCCAGAGCA CGGGGCTTTC CCCTAAACAG
  CAATATTCCT GTATGTTCTC CTCTTCATTT TCTTCATTCT CCCTGCAAAG GTCTCCAAGC
  AATTACAAAC TGCAGGTTAT GTTTGCAATT CGGACCCTTA AAGTTTATCT TTCTTGCCGC
  TCTTCACTTT TCTTTTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37968567	NES09421837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27781844					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37968567	NES09421837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53879600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14308	CpG island 14308	538 bp distal
Gm12468	predicted gene 12468	1272 bp downstream
Gm68624	predicted gene, 68624	within coordinates