rs27781848 SNP Detail

Summary

• ID
  rs27781848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53878176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAAGGA CATGGGGCAG
  AGATATACTC ATGTGGTGTT GAGGAAGGCA GACATTGACC TCACCAAGAG TGTGGGAGAA
  CTCACGGAGG AGGAGGTGGA GCGAGTGATC ACCATCATGC AGAACCCACG ACAGTACAAG
  ATCCCAGACT GGTTCCTGAA CAGACAGAAG GATGGGAAAT ACAGCCAGGT TCTGGCCAAC
  R
  GCATAGACAG CAAGCTGCGT GAGAGCCTGG AGCGGCTGAA GAAAATTCAA GCCCATAGGG
  GGCTGCATCA CTTTTGGGGC CTTCACGTCC GCAGTCAGCA CACCAAGACC ACTGGCTGCA
  GGGGCCGTAC TGTAGGTGTA TCCAAGAAGA AACGAGTCTC TGGGCCTTTG CTGTTAATAA
  ATAGTCTATA TACCTTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37968571	NES09421876	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27781848					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37968571	NES09421876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53878176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14308	CpG island 14308	480 bp proximal
Gm12468	predicted gene 12468	within coordinates
Gm68624	predicted gene, 68624	within coordinates