rs27781851 SNP Detail

Summary

• ID
  rs27781851
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53876785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGACTGA AAAGCTGCGG
  TCTGTGGTCA CTGCAGAAGA CGTGTGTGGA AGTTCACGAT CCAGTCCTTT ATCTCCAGTT
  GCCTGCTGGA GGCTTCATCT GAGTCCCCCC TTCCTTCACT CTGCGTTCTT CGGACCGTCT
  TGGTTTTACT CCCAACATCC GGTCTTGTAG ACTCTTTTCC TTCTCACTGA GAGCCTGCTT
  K
  CTTCCGTTTC CCAATGCTTA GTCTGTTGGC TTTGGGTTTC CACAGTTTGT CTGATCGCTC
  CACACAGCGA CAGTGGATGG ACTGGTAGTG GAGGGTCAGT CGTTCCACTT GGATCCCGGA
  AACCACGCTC TGCTATAAAC ACCTTTCTGC CCAAGGTGTT CCGGCTATGG TCCAACCTCC
  CCAGCGAGGA TGCCTCCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37968574	NES09421923	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27781851					SNP	T	T	T	T	T	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37968574	NES09421923	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53876785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14308	CpG island 14308	1871 bp proximal
Gm12468	predicted gene 12468	1140 bp upstream
Gm68624	predicted gene, 68624	within coordinates
Rr592320	regulatory region 592320	1750 bp proximal