rs27787540 SNP Detail

Summary

• ID
  rs27787540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:36005172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCCTCT GACCTCTTTA
  ATAATTCAAA TAAATCTTGC TTGAATACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC AGTCTCTAAA GTATACAAGT AAGTTGTATA TTTGCTGTTA TACCCTGTAT
  GGAAGTAAAG GAAGGAATCT GGGCCCAGGA AATGTGAAAT CTTGTTGATT CTTACTCATC
  R
  TGTCATAACA TATTCCATGA CAGTGTCTGC TTTACCTATA CTGCATGGCC TCAGTTTCTC
  TTTTATCTAT GGAATGTGCC ATTAGGTAAA TGAGTTAACA CACTTCTTTA TACTATGGAA
  TTCTTCACAG ACATCTATCT ATATATGCAT CAGAGATTAT ATAACTATAT ATTCAAAGCT
  GATAGTATTC ATAATAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37947862	NES09474230	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27787540					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37947862	NES09474230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36005172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm12369	predicted gene 12369			1026 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr41223	transcription start site region 41223			832 bp downstream