rs27787541 SNP Detail

Summary

• ID
  rs27787541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36004175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCATATC TGCTGCCACA
  CTAGGTGTAT AAGCAGTATG GTAGAGGGCC AAGCTGCTCA CTAGGCGTCT GGTCAACAGG
  AGGAGCAAAA GGAGTTGCCC AATGTCCTCA GAAGCACCCA ATACAGCTAC TTTAGCATTG
  GTCTGTGCTG AAGCTGCTGC AGAGAGCAGC AACAGCAGAA TGACTGGGGC TGGCAGAGCA
  Y
  GGATCTACAG GCACAGGAGC AAGAAGGTGA CAAGTGACTC CAACGACTTC CACTCTGCCT
  TATGTAGATC TTTTAAAAGC CAAATAAGTA CCTTTCAGAC TGAAAAGCCC AAGAAATAAT
  TCTGTGAAGG AACTAGGACA TCCACTTGAA AGATAATATC CAGCTAGGAT AACACCAATC
  ACCGTTTGGC TTGAACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37947863	NES09474274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	T
ss321084807	CHEV_4_35951208	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27787541					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37947863	NES09474274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36004175 () rs orientation: forward

Symbol	Name	Function Class
Gm12369	predicted gene 12369	29 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	1829 bp downstream