rs27788423 SNP Detail

Summary

• ID
  rs27788423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34572305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCATTT CTCTTGGAAG
  ACTCTAATTC AGCATGTCCT TTGATGTTGA GATGTCAGTT AGGACTTTTG ACAGCTATGC
  ACTTGTCCCC TGCCTTGCCA TATATTCCAG AATAGAATTT CTCCTGTTGT GTGAGGGGTG
  TCCACCACAC CTGTATTCTG GCTTGCTCTG AGCTGATCTG AATCCTTTCT TTGGCTTCTG
  Y
  TTTTAAAAAA CACAGGATCA GAATAGGAGC TTACTTAGGA CTTCTGAAGC ATAACAACAT
  TTGTGCTTTA CAAACGAAAC AGAGACGGGG GGGGGGGGGG GGGGAGCACA AACCGCTAGG
  AACGCTAGTT AAACACCTAA CTTGTTCTTT GTGACCCACC TCTGCCCAGT CGACGAGGTT
  GATCAGCAGG CTACACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37950848	NES09478113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27788423					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950848	NES09478113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34572305 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	within coordinates