rs27788426 SNP Detail

Summary

• ID
  rs27788426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34570646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCTTGT CATGAAAGAT
  ACGATATTAT TTCACTGGAC CTTTACATTT CTGAGTTTTG TAAGTTAGGG GAGCAGTTTG
  TGAAGGCCCT TACTGGTTGT AAGTCTCCGT GGCTGTTCAT ATGAATGTTT ATTAAGTATA
  AAGCCAAATA GCTTTGGGCC TGGTAAGTTG CCAAGATTAT AAGAAATGGA GAGGCTGAGG
  Y
  GATTTTAGAG CCTTTCTAGC AAGGAAAACA CCTGAAAGAT GTTTACAGTG TCTAACTTTA
  CAGTGTGCTG GCGTTTGGGG TGCTGCTGAG AGCTATGCGT AAGAAGTTCT AGCATTTACA
  CACTAGACAA GCAAGAATGA AGCAATGTAT ACTGATAACA TATAAAGGCT TTATGCATTT
  GTTAGTCTTT GAAGTACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37950851	NES09478135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27788426					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950851	NES09478135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34570646 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	150 bp downstream