rs27788428 SNP Detail

Summary

• ID
  rs27788428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:34570039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGCTGT TGCCTGCCTA
  GTGGGGTCAC CCATAAGTCC TCCTGGGTAG TTTTTTTCAT TCCTATACTT TTGCTCAAGT
  GAGGTCTGCT TTGCTACATA AAGGACAAGG AAAACACTGA TCTTGTTTCT AAAATATCTA
  GTAAGTGCCA GGCACCTCAA TGAAGGATTG AGTTTTTATA GGATACCAAG TAATTACACA
  M
  AATCAGTTTA ATGGTTCAGT CCTACAGGTC CTTTTGATAG TATGAGAAGT CAATGTGCAC
  ACACGCACAA ATGCAGGCAA TGCCTAGGAA AAGAAAACAT GCCTCAGACA AGATAAAAAT
  ATGCCAGTAT TAACACCAGT TCCTCTGTAT TTTATATGCA CAAAATGTTG TGTTGTTTAA
  AGACCTGTTT TCTCGTCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37950853	NES09478133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27788428					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950853	NES09478133	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34570039 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	mRNA-UTR