rs27788430 SNP Detail

Summary

• ID
  rs27788430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34569084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAGTCC GTATTATAAA
  GTATTAGCAT ATGGCTTTTT CCCCCGCTTA CTGGTCAGTT TGATACTTGG CTCGGTCAAT
  TAACCAAGTT ACCTAAGATT ACCGCATTGT TTACTCTATT CATATATGAG CTTCAAAGTC
  TTCAGTTGGC TTCTAAGATA CTTGCCTGAT TCCTTTCACT TTTAATGTTC TCTTGAATTT
  Y
  TACCTACAAA TAAGCATAAA CCTCAACGCT GGAGTTTGAT CTCCTTGCCT CTCTTCAGTG
  CTGACGTTGG TGATCTCTAA ACAAGATTCT GCTCACCTTA CTGTGTAGCA TTTCACCAGA
  ATCTCTCCTG ATTGTTATAG CCAAAGCCAA ACTCAGTTTT GCTGCTGTTT CTTTCAATTA
  GCCTTCCATA ACTACAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37950855	NES09478131	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27788430					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950855	NES09478131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34569084 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	1712 bp downstream