rs27788431 SNP Detail

Summary

• ID
  rs27788431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34569015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TACTCTATTC ATATATGAGC
  K
  TCAAAGTCTT CAGTTGGCTT CTAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37950856	NES09478130	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	G	G		T		T		G	G		T
ss45603028	mCV25038360	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					T		G
ss146173358	ENSMUSSNP2953317	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
ss321074958	CHEV_4_34516264	CHEVERUD	SCREENING_POP	f	SNP												T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27788431					SNP	T	T	G	G	T	G	G	T	T	G	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950856	NES09478130	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34569015 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	1781 bp downstream