rs27788432 SNP Detail

Summary

• ID
  rs27788432
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34568937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTAGT TTTGAAAAAT
  CTGATGTGGT TGCTACAAAC CCACTTCTGG TCTTTTAGAA GAACAGCAAG TTCCTCACTT
  GTGAACTTTA TTAATGTTTA GTTTTAGTGT TGGGGTAAGC CTTTTGGTTA AGACTGTAAA
  GTGATGTTAT GGAGTCCGTA TTATAAAGTA TTAGCATATG GCTTTTTCCC CCGCTTACTG
  K
  TCAGTTTGAT ACTTGGCTCG GTCAATTAAC CAAGTTACCT AAGATTACCG CATTGTTTAC
  TCTATTCATA TATGAGCTTC AAAGTCTTCA GTTGGCTTCT AAGATACTTG CCTGATTCCT
  TTCACTTTTA ATGTTCTCTT GAATTTTTAC CTACAAATAA GCATAAACCT CAACGCTGGA
  GTTTGATCTC CTTGCCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37950857	NES09478129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27788432					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950857	NES09478129	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34568937 () rs orientation: forward

Symbol	Name	Function Class
Orc3	origin recognition complex, subunit 3	1859 bp downstream