rs27788477 SNP Detail

Summary

• ID
  rs27788477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34552569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAAATA TTCATACCCA
  AATCCATGGA GAACCTCAGT TACCTAGTCT GGCTCTTAAA TTTTTGATAT AACGTAGCCA
  AAAGCTGTTT TATGAGTTGC AGTCACTTTT CGTAGAAATT CCAAGACGTT TATTTAAGGA
  TCATACCTAA GCTGCCCTCC CCCACATATG TGTATAAAGG CACTCCTGAC CGAGTTGTTA
  R
  AGGAATGGCT CTCAATCTGT GGGCCGCGAC CCCCGGGGGA ACGCTCCGAT ATTTGCATTA
  TGATTTATAA CAGTAGCAAA ATTACATTAT GAAGTAGCAA CAATAATCAT AGGGTTGGGA
  TCATCACTGC ATGAGGTACT GTGCTAAAGG GTGGGCTTAT CAGGAGCGCT GAGAACCCCC
  TGCTTTAGTC ATTACTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37950903	NES09478589	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27788477					SNP	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950903	NES09478589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34552569 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	862 bp distal
Gm68522	predicted gene, 68522	1748 bp downstream
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	1939 bp downstream
Tssr36766	transcription start site region 36766	1907 bp downstream
Tssr36767	transcription start site region 36767	1881 bp downstream
Tssr36768	transcription start site region 36768	1653 bp downstream
Tssr36769	transcription start site region 36769	1640 bp downstream
Tssr36770	transcription start site region 36770	1624 bp downstream
Tssr41190	transcription start site region 41190	1122 bp upstream