rs27788478 SNP Detail

Summary

• ID
  rs27788478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34551884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA ATGAAAAGGA AGGTGTACTT
  Y
  AAATTGAGAC TGACTAGTTT ATTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37950904	NES09478588	PERLEGEN	MM_PANEL2	f	SNP	C			C			C		T	T		T
ss45706927	mCV23153956	ABI	CRAMUS_MOUSE	f	SNP		C	T		C	T
ss146173202	ENSMUSSNP795000	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
ss321074930	CHEV_4_34499133	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27788478					SNP	C	C	T	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37950904	NES09478588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34551884 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	177 bp distal
Gm68522	predicted gene, 68522	1063 bp downstream
Gm70378	predicted gene, 70378	1327 bp upstream
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	1254 bp downstream
Tssr36766	transcription start site region 36766	1222 bp downstream
Tssr36767	transcription start site region 36767	1196 bp downstream
Tssr36768	transcription start site region 36768	968 bp downstream
Tssr36769	transcription start site region 36769	955 bp downstream
Tssr36770	transcription start site region 36770	939 bp downstream
Tssr41190	transcription start site region 41190	437 bp upstream