rs27798198 SNP Detail

Summary

• ID
  rs27798198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48052282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG AGGCATCTAA GTGGGTGTAA
  R
  CTGGAGTCCT TGCCCTTGCC CGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986728	NES09426885	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G		A	G	G
ss321109608	CHEV_4_48065154	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798198					SNP	G	G	A	G	G	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986728	NES09426885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48052282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14281	CpG island 14281			within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3			Intron
				Noncoding-Transcript-Variant
Rr591933	regulatory region 591933			782 bp distal
Tssr37210	transcription start site region 37210			1501 bp downstream
Tssr37211	transcription start site region 37211			1014 bp downstream
Tssr37212	transcription start site region 37212			985 bp downstream
Tssr37213	transcription start site region 37213			910 bp downstream
Tssr37214	transcription start site region 37214			886 bp downstream
Tssr37215	transcription start site region 37215			838 bp downstream
Tssr37216	transcription start site region 37216			747 bp downstream