rs27798200 SNP Detail

Summary

• ID
  rs27798200
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48051670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG TACTTCAAGC AGTCTCCGCC
  K
  TCTACACCGA CCACTCCAGG CTTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986730	NES09426881	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	T	T	G	T	T	G		G	T	G
ss146276415	ENSMUSSNP2790545	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
ss321109604	CHEV_4_48064542	CHEVERUD	SCREENING_POP	f	SNP												G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798200					SNP	G	G	T	G	T	T	T	G	T	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986730	NES09426881	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48051670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14281	CpG island 14281	within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591933	regulatory region 591933	170 bp distal
Tssr37209	transcription start site region 37209	1704 bp downstream
Tssr37210	transcription start site region 37210	889 bp downstream
Tssr37211	transcription start site region 37211	402 bp downstream
Tssr37212	transcription start site region 37212	373 bp downstream
Tssr37213	transcription start site region 37213	298 bp downstream
Tssr37214	transcription start site region 37214	274 bp downstream
Tssr37215	transcription start site region 37215	226 bp downstream
Tssr37216	transcription start site region 37216	135 bp downstream