rs27798202 SNP Detail

Summary

• ID
  rs27798202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48051154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT TGCCAGCAGG TGGGAGAGGA
  Y
  ACCACTTTCT TGTTTCCTGA TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986732	NES09426878	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	T		C	T	T
ss321109602	CHEV_4_48064026	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798202					SNP	T	T	C	T	T	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986732	NES09426878	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48051154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14281	CpG island 14281	336 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591932	regulatory region 591932	1807 bp distal
Rr591933	regulatory region 591933	325 bp proximal
Tssr37209	transcription start site region 37209	1188 bp downstream
Tssr37210	transcription start site region 37210	373 bp downstream
Tssr37211	transcription start site region 37211	100 bp upstream
Tssr37212	transcription start site region 37212	123 bp upstream
Tssr37213	transcription start site region 37213	213 bp upstream
Tssr37214	transcription start site region 37214	225 bp upstream
Tssr37215	transcription start site region 37215	276 bp upstream
Tssr37216	transcription start site region 37216	369 bp upstream