rs27798203 SNP Detail

Summary

• ID
  rs27798203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48051022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA GAGCAAGGGA GGGAAGATGG
  R
  TGTAGCCATC CCCAGGGAGT CCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986733	NES09426876	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A		G	A	A
ss321109601	CHEV_4_48063894	CHEVERUD	SCREENING_POP	f	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798203					SNP	G	A	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986733	NES09426876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48051022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14280	CpG island 14280	1928 bp distal
Cpgi14281	CpG island 14281	468 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	Intron
Rr591932	regulatory region 591932	1675 bp distal
Rr591933	regulatory region 591933	457 bp proximal
Tssr37207	transcription start site region 37207	1959 bp downstream
Tssr37208	transcription start site region 37208	1930 bp downstream
Tssr37209	transcription start site region 37209	1056 bp downstream
Tssr37210	transcription start site region 37210	241 bp downstream
Tssr37211	transcription start site region 37211	232 bp upstream
Tssr37212	transcription start site region 37212	255 bp upstream
Tssr37213	transcription start site region 37213	345 bp upstream
Tssr37214	transcription start site region 37214	357 bp upstream
Tssr37215	transcription start site region 37215	408 bp upstream
Tssr37216	transcription start site region 37216	501 bp upstream
Tssr41635	transcription start site region 41635	1959 bp upstream
Tssr41636	transcription start site region 41636	1915 bp upstream