rs27798207 SNP Detail

Summary

• ID
  rs27798207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48049190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG GTGGAGAAAC CAACAACCAG
  Y
  GGGCAGTCTG GTCAACCTGC CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986737	NES09426870	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C		C	C	C
ss321109598	CHEV_4_48062062	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798207					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986737	NES09426870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48049190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68858	predicted gene, 68858			1992 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3			Intron
				Noncoding-Transcript-Variant
Rr591930	regulatory region 591930			1502 bp distal
Rr591931	regulatory region 591931			1144 bp distal
Rr591932	regulatory region 591932			within coordinates
Tssr37195	transcription start site region 37195			1932 bp downstream
Tssr37196	transcription start site region 37196			1911 bp downstream
Tssr37197	transcription start site region 37197			1880 bp downstream
Tssr37198	transcription start site region 37198			1863 bp downstream
Tssr37199	transcription start site region 37199			1813 bp downstream
Tssr37200	transcription start site region 37200			1801 bp downstream
Tssr37201	transcription start site region 37201			1437 bp downstream
Tssr37202	transcription start site region 37202			1302 bp downstream
Tssr37203	transcription start site region 37203			1274 bp downstream
Tssr37204	transcription start site region 37204			1101 bp downstream
Tssr37205	transcription start site region 37205			1071 bp downstream
Tssr37206	transcription start site region 37206			907 bp downstream
Tssr37207	transcription start site region 37207			127 bp downstream
Tssr37208	transcription start site region 37208			98 bp downstream
Tssr37209	transcription start site region 37209			736 bp upstream
Tssr37210	transcription start site region 37210			1587 bp upstream
Tssr41635	transcription start site region 41635			127 bp upstream
Tssr41636	transcription start site region 41636			83 bp upstream