rs27798207 SNP Detail

Summary

• ID
  rs27798207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48049190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG GTGGAGAAAC CAACAACCAG
  Y
  GGGCAGTCTG GTCAACCTGC CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986737	NES09426870	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C		C	C	C
ss321109598	CHEV_4_48062062	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798207					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986737	NES09426870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48049190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14279	CpG island 14279	459 bp distal
Cpgi14280	CpG island 14280	96 bp distal
Gm68858	predicted gene, 68858	1992 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591930	regulatory region 591930	1502 bp distal
Rr591931	regulatory region 591931	1144 bp distal
Rr591932	regulatory region 591932	within coordinates
Tssr37195	transcription start site region 37195	1932 bp downstream
Tssr37196	transcription start site region 37196	1911 bp downstream
Tssr37197	transcription start site region 37197	1880 bp downstream
Tssr37198	transcription start site region 37198	1863 bp downstream
Tssr37199	transcription start site region 37199	1813 bp downstream
Tssr37200	transcription start site region 37200	1801 bp downstream
Tssr37201	transcription start site region 37201	1437 bp downstream
Tssr37202	transcription start site region 37202	1302 bp downstream
Tssr37203	transcription start site region 37203	1274 bp downstream
Tssr37204	transcription start site region 37204	1101 bp downstream
Tssr37205	transcription start site region 37205	1071 bp downstream
Tssr37206	transcription start site region 37206	907 bp downstream
Tssr37207	transcription start site region 37207	127 bp downstream
Tssr37208	transcription start site region 37208	98 bp downstream
Tssr37209	transcription start site region 37209	736 bp upstream
Tssr37210	transcription start site region 37210	1587 bp upstream
Tssr41635	transcription start site region 41635	127 bp upstream
Tssr41636	transcription start site region 41636	83 bp upstream