rs27798210 SNP Detail

Summary

• ID
  rs27798210
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48048763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC AACCTTCCCT TAGCTTCCTA
  M
  GACGGTGTGA TGCTTCTTGC CCAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986740	NES09426865	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C		C	C	C
ss321109594	CHEV_4_48061635	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798210					SNP	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986740	NES09426865	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48048763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14279	CpG island 14279	32 bp distal
Cpgi14280	CpG island 14280	106 bp proximal
Gm68858	predicted gene, 68858	1565 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	1576 bp distal
Rr591930	regulatory region 591930	1075 bp distal
Rr591931	regulatory region 591931	717 bp distal
Rr591932	regulatory region 591932	within coordinates
Tssr37195	transcription start site region 37195	1505 bp downstream
Tssr37196	transcription start site region 37196	1484 bp downstream
Tssr37197	transcription start site region 37197	1453 bp downstream
Tssr37198	transcription start site region 37198	1436 bp downstream
Tssr37199	transcription start site region 37199	1386 bp downstream
Tssr37200	transcription start site region 37200	1374 bp downstream
Tssr37201	transcription start site region 37201	1010 bp downstream
Tssr37202	transcription start site region 37202	875 bp downstream
Tssr37203	transcription start site region 37203	847 bp downstream
Tssr37204	transcription start site region 37204	674 bp downstream
Tssr37205	transcription start site region 37205	644 bp downstream
Tssr37206	transcription start site region 37206	480 bp downstream
Tssr37207	transcription start site region 37207	263 bp upstream
Tssr37208	transcription start site region 37208	317 bp upstream
Tssr37209	transcription start site region 37209	1163 bp upstream
Tssr41633	transcription start site region 41633	1802 bp upstream
Tssr41634	transcription start site region 41634	1613 bp upstream
Tssr41635	transcription start site region 41635	285 bp downstream
Tssr41636	transcription start site region 41636	334 bp downstream