rs27798212 SNP Detail

Summary

• ID
  rs27798212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48048095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT CCTCCCTGCC AGTCAAGCTG
  M
  GCTTCCAACC ACAAAGTTTC ACTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986742	NES09426863	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	A	A		C	A	A
ss321109590	CHEV_4_48060967	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798212					SNP	A	A	C	A	A	A	C	A	A	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986742	NES09426863	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48048095 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68858	predicted gene, 68858			897 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3			Intron
				Noncoding-Transcript-Variant
Rr591928	regulatory region 591928			908 bp distal
Rr591930	regulatory region 591930			407 bp distal
Rr591931	regulatory region 591931			49 bp distal
Rr591932	regulatory region 591932			594 bp proximal
Tssr37195	transcription start site region 37195			837 bp downstream
Tssr37196	transcription start site region 37196			816 bp downstream
Tssr37197	transcription start site region 37197			785 bp downstream
Tssr37198	transcription start site region 37198			768 bp downstream
Tssr37199	transcription start site region 37199			718 bp downstream
Tssr37200	transcription start site region 37200			706 bp downstream
Tssr37201	transcription start site region 37201			342 bp downstream
Tssr37202	transcription start site region 37202			207 bp downstream
Tssr37203	transcription start site region 37203			179 bp downstream
Tssr37204	transcription start site region 37204			6 bp downstream
Tssr37205	transcription start site region 37205			17 bp upstream
Tssr37206	transcription start site region 37206			180 bp upstream
Tssr37207	transcription start site region 37207			931 bp upstream
Tssr37208	transcription start site region 37208			985 bp upstream
Tssr37209	transcription start site region 37209			1831 bp upstream
Tssr41633	transcription start site region 41633			1134 bp upstream
Tssr41634	transcription start site region 41634			945 bp upstream
Tssr41635	transcription start site region 41635			953 bp downstream
Tssr41636	transcription start site region 41636			1002 bp downstream