rs27798213 SNP Detail

Summary

• ID
  rs27798213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48047635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG AAAGGCTCCC AGAGAGAGTG
  R
  GCATAGGAAA CCCAGTAGAA TAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986743	NES09426861	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		G	G	G
ss321109588	CHEV_4_48060507	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798213					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986743	NES09426861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48047635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	907 bp distal
Cpgi14279	CpG island 14279	within coordinates
Cpgi14280	CpG island 14280	1234 bp proximal
Gm68858	predicted gene, 68858	437 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	448 bp distal
Rr591930	regulatory region 591930	within coordinates
Rr591931	regulatory region 591931	390 bp proximal
Rr591932	regulatory region 591932	1054 bp proximal
Tssr37194	transcription start site region 37194	1660 bp downstream
Tssr37195	transcription start site region 37195	377 bp downstream
Tssr37196	transcription start site region 37196	356 bp downstream
Tssr37197	transcription start site region 37197	325 bp downstream
Tssr37198	transcription start site region 37198	308 bp downstream
Tssr37199	transcription start site region 37199	258 bp downstream
Tssr37200	transcription start site region 37200	246 bp downstream
Tssr37201	transcription start site region 37201	103 bp upstream
Tssr37202	transcription start site region 37202	229 bp upstream
Tssr37203	transcription start site region 37203	266 bp upstream
Tssr37204	transcription start site region 37204	432 bp upstream
Tssr37205	transcription start site region 37205	477 bp upstream
Tssr37206	transcription start site region 37206	640 bp upstream
Tssr37207	transcription start site region 37207	1391 bp upstream
Tssr37208	transcription start site region 37208	1445 bp upstream
Tssr41633	transcription start site region 41633	674 bp upstream
Tssr41634	transcription start site region 41634	485 bp upstream
Tssr41635	transcription start site region 41635	1413 bp downstream
Tssr41636	transcription start site region 41636	1462 bp downstream