rs27798216 SNP Detail

Summary

• ID
  rs27798216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48046249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GTGCCTGGGC AGCAGCGGCC
  R
  GAGTTTGCAG AGGCTCTGGA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37986746	NES09426856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G		A	G	G		G
ss321109585	CHEV_4_48059121	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27798216					SNP	G	G	G	G	G	A	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986746	NES09426856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48046249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68858	predicted gene, 68858			683 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3			Intron
				Noncoding-Transcript-Variant
Rr376438	regulatory region 376438			1032 bp downstream
Rr591927	regulatory region 591927			1086 bp distal
Rr591928	regulatory region 591928			within coordinates
Rr591929	regulatory region 591929			703 bp distal
Rr591930	regulatory region 591930			939 bp proximal
Rr591931	regulatory region 591931			1776 bp proximal
Tssr37187	transcription start site region 37187			1125 bp downstream
Tssr37188	transcription start site region 37188			1089 bp downstream
Tssr37189	transcription start site region 37189			1059 bp downstream
Tssr37190	transcription start site region 37190			1011 bp downstream
Tssr37191	transcription start site region 37191			942 bp downstream
Tssr37192	transcription start site region 37192			916 bp downstream
Tssr37193	transcription start site region 37193			860 bp downstream
Tssr37194	transcription start site region 37194			274 bp downstream
Tssr37195	transcription start site region 37195			991 bp upstream
Tssr37196	transcription start site region 37196			1017 bp upstream
Tssr37197	transcription start site region 37197			1053 bp upstream
Tssr37198	transcription start site region 37198			1075 bp upstream
Tssr37199	transcription start site region 37199			1090 bp upstream
Tssr37200	transcription start site region 37200			1135 bp upstream
Tssr37201	transcription start site region 37201			1489 bp upstream
Tssr37202	transcription start site region 37202			1615 bp upstream
Tssr37203	transcription start site region 37203			1652 bp upstream
Tssr37204	transcription start site region 37204			1818 bp upstream
Tssr37205	transcription start site region 37205			1863 bp upstream
Tssr41631	transcription start site region 41631			1345 bp upstream
Tssr41632	transcription start site region 41632			1268 bp upstream
Tssr41633	transcription start site region 41633			686 bp downstream
Tssr41634	transcription start site region 41634			886 bp downstream