rs27798216 SNP Detail

Summary

• ID
  rs27798216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48046249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GTGCCTGGGC AGCAGCGGCC
  R
  GAGTTTGCAG AGGCTCTGGA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37986746	NES09426856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G		A	G	G		G
ss321109585	CHEV_4_48059121	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27798216					SNP	G	G	G	G	G	A	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986746	NES09426856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48046249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	within coordinates
Cpgi14279	CpG island 14279	1038 bp proximal
Gm68858	predicted gene, 68858	683 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	1032 bp downstream
Rr591927	regulatory region 591927	1086 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	703 bp distal
Rr591930	regulatory region 591930	939 bp proximal
Rr591931	regulatory region 591931	1776 bp proximal
Tssr37187	transcription start site region 37187	1125 bp downstream
Tssr37188	transcription start site region 37188	1089 bp downstream
Tssr37189	transcription start site region 37189	1059 bp downstream
Tssr37190	transcription start site region 37190	1011 bp downstream
Tssr37191	transcription start site region 37191	942 bp downstream
Tssr37192	transcription start site region 37192	916 bp downstream
Tssr37193	transcription start site region 37193	860 bp downstream
Tssr37194	transcription start site region 37194	274 bp downstream
Tssr37195	transcription start site region 37195	991 bp upstream
Tssr37196	transcription start site region 37196	1017 bp upstream
Tssr37197	transcription start site region 37197	1053 bp upstream
Tssr37198	transcription start site region 37198	1075 bp upstream
Tssr37199	transcription start site region 37199	1090 bp upstream
Tssr37200	transcription start site region 37200	1135 bp upstream
Tssr37201	transcription start site region 37201	1489 bp upstream
Tssr37202	transcription start site region 37202	1615 bp upstream
Tssr37203	transcription start site region 37203	1652 bp upstream
Tssr37204	transcription start site region 37204	1818 bp upstream
Tssr37205	transcription start site region 37205	1863 bp upstream
Tssr41631	transcription start site region 41631	1345 bp upstream
Tssr41632	transcription start site region 41632	1268 bp upstream
Tssr41633	transcription start site region 41633	686 bp downstream
Tssr41634	transcription start site region 41634	886 bp downstream