rs27798217 SNP Detail

Summary

• ID
  rs27798217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48045784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG CGCGCTGGGA AGTGTCGCTC
  Y
  TGAAATTGAC AACTTTTAAT ATGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986747	NES09426855	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C		T	C	C
ss321109583	CHEV_4_48058656	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798217					SNP	C	C	T	C	C	C	T	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986747	NES09426855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48045784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1975 bp distal
Cpgi14278	CpG island 14278	within coordinates
Cpgi14279	CpG island 14279	1503 bp proximal
Gm68858	predicted gene, 68858	1148 bp downstream
Gm69235	predicted gene, 69235	1556 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	567 bp downstream
Rr591927	regulatory region 591927	621 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	238 bp distal
Rr591930	regulatory region 591930	1404 bp proximal
Tssr37185	transcription start site region 37185	1935 bp downstream
Tssr37186	transcription start site region 37186	1920 bp downstream
Tssr37187	transcription start site region 37187	660 bp downstream
Tssr37188	transcription start site region 37188	624 bp downstream
Tssr37189	transcription start site region 37189	594 bp downstream
Tssr37190	transcription start site region 37190	546 bp downstream
Tssr37191	transcription start site region 37191	477 bp downstream
Tssr37192	transcription start site region 37192	451 bp downstream
Tssr37193	transcription start site region 37193	395 bp downstream
Tssr37194	transcription start site region 37194	186 bp upstream
Tssr37195	transcription start site region 37195	1456 bp upstream
Tssr37196	transcription start site region 37196	1482 bp upstream
Tssr37197	transcription start site region 37197	1518 bp upstream
Tssr37198	transcription start site region 37198	1540 bp upstream
Tssr37199	transcription start site region 37199	1555 bp upstream
Tssr37200	transcription start site region 37200	1600 bp upstream
Tssr37201	transcription start site region 37201	1954 bp upstream
Tssr41631	transcription start site region 41631	880 bp upstream
Tssr41632	transcription start site region 41632	803 bp upstream
Tssr41633	transcription start site region 41633	1151 bp downstream
Tssr41634	transcription start site region 41634	1351 bp downstream