rs27798221 SNP Detail

Summary

• ID
  rs27798221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48045091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GGGTGACGTA GCGTCCCATG
  K
  CGTCACATTG ACGTCTCGCA TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37986751	NES09426903	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	T	T		G	T	T
ss321109580	CHEV_4_48057963	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27798221					SNP	T	T	G	T	T	T	G	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986751	NES09426903	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48045091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1282 bp distal
Cpgi14278	CpG island 14278	within coordinates
Gm57084	predicted gene, 57084	1878 bp upstream
Gm68858	predicted gene, 68858	1841 bp downstream
Gm69235	predicted gene, 69235	863 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	62 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591924	regulatory region 591924	1663 bp distal
Rr591926	regulatory region 591926	1429 bp distal
Rr591927	regulatory region 591927	within coordinates
Rr591928	regulatory region 591928	73 bp proximal
Rr591929	regulatory region 591929	434 bp proximal
Tssr37181	transcription start site region 37181	1550 bp downstream
Tssr37182	transcription start site region 37182	1519 bp downstream
Tssr37183	transcription start site region 37183	1439 bp downstream
Tssr37184	transcription start site region 37184	1414 bp downstream
Tssr37185	transcription start site region 37185	1242 bp downstream
Tssr37186	transcription start site region 37186	1227 bp downstream
Tssr37187	transcription start site region 37187	24 bp upstream
Tssr37188	transcription start site region 37188	53 bp upstream
Tssr37189	transcription start site region 37189	84 bp upstream
Tssr37190	transcription start site region 37190	139 bp upstream
Tssr37191	transcription start site region 37191	166 bp upstream
Tssr37192	transcription start site region 37192	233 bp upstream
Tssr37193	transcription start site region 37193	289 bp upstream
Tssr37194	transcription start site region 37194	879 bp upstream
Tssr41630	transcription start site region 41630	1851 bp upstream
Tssr41631	transcription start site region 41631	187 bp upstream
Tssr41632	transcription start site region 41632	110 bp upstream
Tssr41633	transcription start site region 41633	1844 bp downstream