rs27798222 SNP Detail

Summary

• ID
  rs27798222
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48044872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCG GCGCCCTGGC AAGCGGCTCC
  S
  GTGCAGAGGG GTTGGCCGCG CGAAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37986752	NES09427033	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	C		G	C	C	G	G	C	G
ss45684545	mCV24735987	ABI	CRAMUS_MOUSE	f	SNP	G						C		C
ss146276401	ENSMUSSNP4778544	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27798222					SNP	G	C	G	C	C	C	C	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986752	NES09427033	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48044872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1063 bp distal
Cpgi14278	CpG island 14278	within coordinates
Gm57084	predicted gene, 57084	1659 bp upstream
Gm69235	predicted gene, 69235	644 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	281 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591923	regulatory region 591923	1972 bp distal
Rr591924	regulatory region 591924	1444 bp distal
Rr591925	regulatory region 591925	1897 bp distal
Rr591926	regulatory region 591926	1210 bp distal
Rr591927	regulatory region 591927	within coordinates
Rr591928	regulatory region 591928	292 bp proximal
Rr591929	regulatory region 591929	653 bp proximal
Tssr37180	transcription start site region 37180	1849 bp downstream
Tssr37181	transcription start site region 37181	1331 bp downstream
Tssr37182	transcription start site region 37182	1300 bp downstream
Tssr37183	transcription start site region 37183	1220 bp downstream
Tssr37184	transcription start site region 37184	1195 bp downstream
Tssr37185	transcription start site region 37185	1023 bp downstream
Tssr37186	transcription start site region 37186	1008 bp downstream
Tssr37187	transcription start site region 37187	243 bp upstream
Tssr37188	transcription start site region 37188	272 bp upstream
Tssr37189	transcription start site region 37189	303 bp upstream
Tssr37190	transcription start site region 37190	358 bp upstream
Tssr37191	transcription start site region 37191	385 bp upstream
Tssr37192	transcription start site region 37192	452 bp upstream
Tssr37193	transcription start site region 37193	508 bp upstream
Tssr37194	transcription start site region 37194	1098 bp upstream
Tssr41630	transcription start site region 41630	1632 bp upstream
Tssr41631	transcription start site region 41631	21 bp downstream
Tssr41632	transcription start site region 41632	79 bp downstream