rs27798226 SNP Detail

Summary

• ID
  rs27798226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48043164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCGAGTC GGGGCTGGTC
  GGGCAGGCTC GGTGGCGGGA CCTGGCCCAG AGGCTTGCAA TGCCCGGGCG AGCAGATGGG
  GAGGATCGCG CTCGGCCTTC GGGGCGCGCG CACCCCAGGC AGCGCGCCTC GCTCGCGCCC
  GCGCCTCCCT TCCAGCCCCC TACCCTCGGC CCCACGTTGC CGGGCATCAG ACAGGGTCGA
  R
  CCGAGTACAA GATGGCGACT CGGCAGTCCG CTCTCCGGGC AGAGTCGGGG CGCCCCTTAG
  CGCGGCGCGC GCGTGCGCGC GCCCGACGTC CCACTAAAAA TAGCTGGGAC CCGTCTATAT
  TTGGTTCGCC GGATCCCGGC GCGGACGCGC GCGTCCCACC CCGCCCCGCC CCACGCCGCG
  CCGCGCTGAA TGGAGACGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37986756	NES09427029	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27798226					SNP	A	G	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37986756	NES09427029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48043164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	within coordinates
Cpgi14278	CpG island 14278	1381 bp proximal
Gm57084	predicted gene, 57084	within coordinates
Gm69235	predicted gene, 69235	254 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	1989 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591923	regulatory region 591923	264 bp distal
Rr591924	regulatory region 591924	within coordinates
Rr591925	regulatory region 591925	189 bp distal
Rr591926	regulatory region 591926	265 bp proximal
Rr591927	regulatory region 591927	1499 bp proximal
Rr591928	regulatory region 591928	2000 bp proximal
Tssr37180	transcription start site region 37180	141 bp downstream
Tssr37181	transcription start site region 37181	351 bp upstream
Tssr37182	transcription start site region 37182	381 bp upstream
Tssr37183	transcription start site region 37183	476 bp upstream
Tssr37184	transcription start site region 37184	494 bp upstream
Tssr37185	transcription start site region 37185	676 bp upstream
Tssr37186	transcription start site region 37186	691 bp upstream
Tssr37187	transcription start site region 37187	1951 bp upstream
Tssr37188	transcription start site region 37188	1980 bp upstream
Tssr41627	transcription start site region 41627	665 bp upstream
Tssr41628	transcription start site region 41628	632 bp upstream
Tssr41629	transcription start site region 41629	293 bp upstream
Tssr41630	transcription start site region 41630	25 bp downstream
Tssr41631	transcription start site region 41631	1729 bp downstream
Tssr41632	transcription start site region 41632	1787 bp downstream