rs27803234 SNP Detail

Summary

• ID
  rs27803234
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:39112386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGGCAT CCAGCTCCAT
  AGTTTTTAAA GTTAACACCA CTGACTTCAA AATATATTGA CTGATTTCAT AAAAGCGTTT
  GCTTAGGAAA AAGAAGCACA CATGGAGAGA AACAGCTATG GAGGTAAGCA ACAGATTTTA
  TGCTCCAATG TGGCACTGGT ATTATGAGTG TATACTTACT TGTGAATGTA TGTAAAAACT
  M
  ATTATATGTA CACATAAAAG AGAAAAGATG TTTTATATAT ATAGATTATG CCTCAGTAAT
  ATGGAAACTG GATTTCCAAT CTGGAACATA CTCAATTGTT GGGCATTAAA ATGATGTAAT
  TGGCCACCAC AGCTTCATCT TTTACATGCA TAGAAAGGTA AGCCACCACC AGAGACTCTT
  AGTTGTTTCC AGATCCAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37943272	NES09456809	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27803234					SNP	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37943272	NES09456809	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:39112386 () rs orientation: forward

Symbol	Name	Function Class
D4Mit236	DNA segment, Chr 4, Massachusetts Institute of Technology 236	241 bp distal