rs27803590 SNP Detail

Summary

• ID
  rs27803590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34487515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA GGTCTAGACG AAGGACTATA
  R
  GTGTGCTAAC ATTTCGCACT CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss37951016	NES09460091	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G	G	G	A		G	G
ss45606828	mCV22883029	ABI	CRAMUS_MOUSE	f	SNP	A	A						G
ss146172242	ENSMUSSNP3894778	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss321074792	CHEV_4_34434764	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs27803590					SNP	A	A	G	G	A	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37951016	NES09460091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34487515 () rs orientation: forward

Symbol	Name	Function Class
Gm12350	predicted gene 12350	1222 bp downstream
Gm33434	predicted gene, 33434	1924 bp upstream
Rr590219	regulatory region 590219	1637 bp distal
Tssr36763	transcription start site region 36763	1749 bp downstream
Tssr36764	transcription start site region 36764	1735 bp downstream
Tssr36765	transcription start site region 36765	1718 bp downstream