rs27804364 SNP Detail

Summary

• ID
  rs27804364
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47024489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATGCTG CCAGCCCTAT
  TGGCCTATCT ACGTGTCAAG AAGAAATGGC CGTGCTATGG AGAGAGGCTA ACAGGCTTCC
  CATCCCTGGG GCTGGGAGAT TGTCAGAGTG GCCCAGGTGA AGACACCCCA CCACTCTGCA
  GCAGCCTGAA ACCCAGAGGG GCAGGAACAG GCTCCCACAC CCAACAAATC CAGCCCTATC
  S
  ACCCAGTCCT GCATACACAG TGTAGGTGTG ATGGCTGGAG CTTCAGAGCC ACACTAGACT
  TTGAGGACAA GGGCCACACA GCTCACGGAA TAGAAGCGAG GTACAGTCTG AGACATGTTC
  TGTGGACACC TCAACGAAGA GCAGGCAGTA GCGAGGAATC AGGAAACGGC TCTTGGAAAC
  AAAGAAAGCT CTGTGGAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37990892	NES09450857	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27804364					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37990892	NES09450857	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47024489 () rs orientation: forward

Symbol	Name	Function Class
Anks6	ankyrin repeat and sterile alpha motif domain containing 6	within coordinates
Rr89303	regulatory region 89303	89 bp distal
Rr94180	regulatory region 94180	289 bp distal
Rr94181	regulatory region 94181	within coordinates
Rr94182	regulatory region 94182	1312 bp proximal
Rr98160	regulatory region 98160	1514 bp distal
Rr98161	regulatory region 98161	1079 bp distal