rs27804366 SNP Detail

Summary

• ID
  rs27804366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47024080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGTCTG TGGGACACTG
  TCCCTACCGC ACAGGAGTCC TGCAGAGGGG CCGCTGAGGC TGCTGCGTGA GCCCACTATG
  ACTCACTACT TCCAAGTCTG GCCTGACACT TCAAGACTAA TGGTTCACAG CCTAGCCCTC
  TGCTTCCCAA CAGAGGCACT GTGGGAAGAT TCAAAACGAA CAGAGGAAAG TGTTGGCGAC
  R
  GGGATCTGCC ACTAGGAAAG GGATCCCCAT GTGACTGCAG GCAGCAATAT GGAGTGCATG
  GAAGTGTCCC CCTACAGGAT GAGGGGTGTA CACTGTGAGA AGACAGCCTG AGAGATGAGC
  AGATGCAAGA GAGGAGAGAA GGGTCATAGA GAGCCAAGGC AGAGACACCA GCAGCGACGT
  GTGCAACTGT ACCCTTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37990894	NES09450854	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A		A	A	A	A	A	A	A	A
ss45671629	mCV25226655	ABI	CRAMUS_MOUSE	f	SNP		A	G				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27804366					SNP	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37990894	NES09450854	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47024080 () rs orientation: forward

Symbol	Name	Function Class
Anks6	ankyrin repeat and sterile alpha motif domain containing 6	within coordinates
Rr89303	regulatory region 89303	within coordinates
Rr94180	regulatory region 94180	within coordinates
Rr94181	regulatory region 94181	321 bp proximal
Rr94182	regulatory region 94182	1721 bp proximal
Rr98160	regulatory region 98160	1105 bp distal
Rr98161	regulatory region 98161	670 bp distal