rs27804376 SNP Detail

Summary

• ID
  rs27804376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47022873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAGTAG CCACTGGCCC
  AGATCTGGCT ATGCAACAGA GAGGAGGAGG GCGAGAGGAC AGAAGCCCTG GGTTCAACTT
  CTCCCTTAGA TGCCTAGCAT GGCAGCCAGG CAGGGTTAAG TCTTGGAGTG TCTACTCCCT
  TGCCAGGCAG CTGTGCAGAC TCTGGCCTTA TCAGGGCTGA GTAAGACATG TTTGCTGAGT
  R
  ACTTGCAGAT GATAAAAGGC GGCATGGATA CTTTTTTTTT GCTTGGGCAC TGTTCATCTG
  TTCACCGTTG CAGAACACAA TCTCCAGAGC AGAGAAGAAA CCAGAAGCCT TGCGTCACCT
  CACATAGTGC AACACAACCA GGGAATAGCC AAACCATGAA GAAAAAGGAA CAAGAAAAAG
  GCAGAGTGTC CATGCTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37990904	NES09450844	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27804376					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37990904	NES09450844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47022873 () rs orientation: forward

Symbol	Name	Function Class
Anks6	ankyrin repeat and sterile alpha motif domain containing 6	within coordinates
Rr89302	regulatory region 89302	1673 bp distal
Rr89303	regulatory region 89303	1128 bp proximal
Rr94180	regulatory region 94180	928 bp proximal
Rr94181	regulatory region 94181	1528 bp proximal
Rr98160	regulatory region 98160	within coordinates
Rr98161	regulatory region 98161	130 bp proximal
Rr106853	regulatory region 106853	1965 bp distal
Rr398258	regulatory region 398258	1933 bp downstream